DAGmaps: Space Filling Visualization of Directed Acyclic Graphs

Authors

  • Vassilis Tsiaras
  • Sofia Triantafilou
  • Ioannis Tollis

DOI:

https://doi.org/10.7155/jgaa.00190

Keywords:

Directed Acyclic Graph (DAG) , Two Terminal Series Parallel Digraph , Space Filling Visualization , Treemap , DAGmap , Gene Ontology

Abstract

Gene Ontology information related to the biological role of genes is organized in a hierarchical manner that can be represented by a directed acyclic graph (DAG). Space filling visualizations, such as the treemaps, have the capacity to display thousands of items legibly in limited space via a two-dimensional rectangular map. Treemaps have been used to visualize the Gene Ontology by first transforming the DAG into a tree. However this transformation has several undesirable effects such as producing trees with a large number of nodes and scattering the rectangles associated with the duplicates of a node around the display rectangle. In this paper we introduce the problem of visualizing a DAG with space filling techniques without converting it to a tree first, we present two special cases of the problem, and we discuss complexity issues.

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Published

2009-11-01

How to Cite

Tsiaras, V., Triantafilou, S., & Tollis, I. (2009). DAGmaps: Space Filling Visualization of Directed Acyclic Graphs. Journal of Graph Algorithms and Applications, 13(3), 319–347. https://doi.org/10.7155/jgaa.00190